College of Agricultural Sciences

H. Akbar, Bionaz, M., Carlson, D. B., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Drackley, J. K., and Loor, J. J., “Feed restriction, but not l-carnitine infusion, alters the liver transcriptome by inhibiting sterol synthesis and mitochondrial oxidative phosphorylation and increasing gluconeogenesis in mid-lactation dairy cows.”, J Dairy Sci, vol. 96, no. 4, pp. 2201-13, 2013.

J. J. Loor, Moyes, K. M., and Bionaz, M., “Functional adaptations of the transcriptome to mastitis-causing pathogens: the mammary gland and beyond.”, J Mammary Gland Biol Neoplasia, vol. 16, no. 4, pp. 305-22, 2011.

G. W. Miller, Truong, L., Barton, C. L., Labut, E. M., Lebold, K. M., Traber, M. G., and Tanguay, R. L., “The influences of parental diet and vitamin E intake on the embryonic zebrafish transcriptome.”, Comp Biochem Physiol Part D Genomics Proteomics, vol. 10, pp. 22-9, 2014.

J. Pérez, Buchanan, A., Mellbye, B., Ferrell, R., Chang, J. H., Chaplen, F., Bottomley, P. J., Arp, D. J., and Sayavedra-Soto, L. A., “Interactions of Nitrosomonas europaea and Nitrobacter winogradskyi grown in co-culture.”, Arch Microbiol, vol. 197, no. 1, pp. 79-89, 2015.

S. Garczynski, Hendrickson, C., Harper, A., Unruh, T., Dhingra, A., Ahn, S. - J., and Choi, M. - Y., “Neuropeptides and peptide hormones identified in codling moth, Cydia pomonella (Lepidoptera: Tortricidae)”, Archives of Insect Biochem. Physiol. (in press), 2019.

L. A. Sayavedra-Soto, Ferrell, R., Dobie, M., Mellbye, B., Chaplen, F., Buchanan, A., Chang, J. H., Bottomley, P. J., and Arp, D. J., “Nitrobacter winogradskyi transcriptomic response to low and high ammonium concentrations.”, FEMS Microbiol Lett, vol. 362, no. 3, pp. 1-7, 2015.

M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L., and Loor, J. J., “A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome.”, PLoS One, vol. 7, no. 3, p. e32455, 2012.

M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L., and Loor, J. J., “Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle.”, PLoS One, vol. 7, no. 3, p. e33268, 2012.

D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish.”, Toxicol Appl Pharmacol, vol. 308, pp. 32-45, 2016.

T. M. Grala, Kay, J. K., Phyn, C. V. C., Bionaz, M., Walker, C. G., Rius, A. G., Snell, R. G., and Roche, J. R., “Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle.”, Physiol Genomics, vol. 45, no. 23, pp. 1157-67, 2013.

E. Monaco, Bionaz, M., de Lima, A. Sobreira, Hurley, W. L., Loor, J. J., and Wheeler, M. B., “Selection and reliability of internal reference genes for quantitative PCR verification of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells.”, Stem Cell Res Ther, vol. 1, no. 1, p. 7, 2010.

M. Bionaz, Monaco, E., and Wheeler, M. B., “Transcription Adaptation during In Vitro Adipogenesis and Osteogenesis of Porcine Mesenchymal Stem Cells: Dynamics of Pathways, Biological Processes, Up-Stream Regulators, and Gene Networks.”, PLoS One, vol. 10, no. 9, p. e0137644, 2015.

D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Transcriptomic and phenotypic profiling in developing zebrafish exposed to thyroid hormone receptor agonists.”, Reprod Toxicol, vol. 77, pp. 80-93, 2018.

E. Monaco, Bionaz, M., Rodriguez-Zas, S., Hurley, W. L., and Wheeler, M. B., “Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.”, PLoS One, vol. 7, no. 3, p. e32481, 2012.