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Metabolic Networks and Pathways
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A
J. Sun
,
Todd, J. D.
,
J Thrash, C.
,
Qian, Y. P. L.
,
Qian, M. C.
,
Temperton, B.
,
Guo, J.
,
Fowler, E. K.
,
Aldrich, J. T.
,
Nicora, C. D.
,
Lipton, M. S.
,
Smith, R. D.
,
De Leenheer, P.
,
Payne, S. H.
,
Johnston, A. W. B.
,
Davie-Martin, C. L.
,
Halsey, K. H.
, and
Giovannoni, S. J.
,
“
The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.
”
,
Nat Microbiol
, vol. 1, no. 8, p. 16065, 2016.
G
K. Youens-Clark
,
Buckler, E.
,
Casstevens, T.
,
Chen, C.
,
Declerck, G.
,
Derwent, P.
,
Dharmawardhana, P.
,
Jaiswal, P.
,
Kersey, P.
,
Karthikeyan, A. S.
,
Lu, J.
,
McCouch, S. R.
,
Ren, L.
,
Spooner, W.
,
Stein, J. C.
,
Thomason, J.
,
Wei, S.
, and
Ware, D.
,
“
Gramene database in 2010: updates and extensions.
”
,
Nucleic acids research
, vol. 39, pp. D1085-94, 2011.
I
M. R. Smith
,
Boenzli, M. G.
,
Hindagolla, V.
,
Ding, J.
,
Miller, J. M.
,
Hutchison, J. E.
,
Greenwood, J. A.
,
Abeliovich, H.
, and
Bakalinsky, A. T.
,
“
Identification of gold nanoparticle-resistant mutants of Saccharomyces cerevisiae suggests a role for respiratory metabolism in mediating toxicity.
”
,
Appl Environ Microbiol
, vol. 79, no. 2, pp. 728-33, 2013.
P
S. Naithani
and
Jaiswal, P.
,
“
Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.
”
,
Methods in molecular biology (Clifton, N.J.)
, vol. 1533, pp. 241-256, 2017.
S. Naithani
,
Preece, J.
,
D’Eustachio, P.
,
Gupta, P.
,
Amarasinghe, V.
,
Dharmawardhana, P. D.
,
Wu, G.
,
Fabregat, A.
,
Elser, J. L.
,
Weiser, J.
,
Keays, M.
,
Fuentes, A. Munoz- Pome
,
Petryszak, R.
,
Stein, L. D.
,
Ware, D.
, and
Jaiswal, P.
,
“
Plant Reactome: a resource for plant pathways and comparative analysis.
”
,
Nucleic acids research
, vol. 45, pp. D1029-D1039, 2018.
I. Motorykin
,
Traber, M. G.
,
Tanguay, R. L.
, and
Maier, C. S.
,
“
Proteome-driven elucidation of adaptive responses to combined vitamin E and C deficiency in zebrafish.
”
,
J Proteome Res
, vol. 13, no. 3, pp. 1647-56, 2014.